Bioscience for sustainable agriculture and food

Category: CASE Studentships

Improving second-generation biofuel production: exploiting the natural diversity of the yeast Scheffersomyces stipites

Project No. – 2026

Primary Supervisor

Dr Alessia Buscaino – University of Kent


Dr Andrew Armitage – Natural Resources Institution

Dr Oliver Severn – Singer Instruments


Human activity is driving a global climate crisis and fossil fuels need to be quickly replaced with renewable energy. Second generation biofuels, generated from forestry and agriculture waste, have great potential to replace petroleum-based fuels.

This is because biomass is a renewable resource and have, after combustion, a theoretical net null CO2 emission. However, production of second-generation biofuels is still inefficient and faces important challenges as Saccharomyces cerevisiae, the most heavily used organism for ethanol production, cannot ferment pentose sugars (i.e. xylose) found in large concentration in agriculture and forestry waste. This PhD project focuses one of the most promising secondgeneration bioethanol producer: the yeast Scheffersomyces stipitis. Contrary to S. cerevisiae, S. stipitis ferments both pentose and exose sugars. To date, only few S. stipitis strains have been tested for bioethanol production and it is clear that the use of these stains is not suited to large industrial production as their performance is suboptimal.

Our hypothesis is that novel yet uncharacterised S. stipitis natural isolates possess characteristics that can be exploited for efficient bioethanol production. To test this hypothesis we have collected 40 S. stipitis natural strains sampled from different geographical locations. In this cross-disciplinary project the PhD student will combine Microbiology, Biotechnology, Robotics, Genetics, Genomics and Bioinformatics to identify novel S. stipitis natural isolates that are superior bioethanol producers (Objective 1 in Collaboration with Singer Instruments) and to determine the genetic drivers leading to improved bioethanol production (Objective 2 in Collaboration with NIAB-EMR). Outcomes: This project will lead to the identification of S. stipitis strains that are superior bioethanol producers. These isolates are ideal candidates for industrial implementation. Alternatively, the genetic drivers responsible for improved second generation biofuels production could be transferred to industrial strains thereby creating novel yeasts with extra beneficial features.